Pacific Rim Symposium on Surfaces, Coatings and Interfaces (PacSurf 2014)
    Biomaterial Interfaces Tuesday Sessions
       Session BI-TuP

Paper BI-TuP10
Enhancing Protein Adsorption Simulations by Using Accelerated Molecular Dynamics

Tuesday, December 9, 2014, 4:00 pm, Room Mauka

Session: Biomaterial Interfaces Poster Session
Presenter: Herbert Urbassek, Physics Department, University of Kaiserslautern, Kaiserslautern, Germany
Authors: M. Urbassek, Physics Department, University of Kaiserslautern, Kaiserslautern, Germany
X. Muecksch, Physics Department, University of Kaiserslautern, Kaiserslautern, Germany
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The atomistic modeling of protein adsorption on surfaces is hampered by the different time scales of the simulation (<< 1 ms) and experiment (up to hours), and the accordingly different ‘final’ adsorption conformations. We provide evidence that the method of accelerated molecular dynamics is an efficient tool to obtain equilibrated adsorption states. As a model system we study the adsorption of the protein BMP-2 on graphite in an explicit salt water environment. We demonstrate that due to the considerably improved sampling of conformational space, accelerated molecular dynamics allows to observe the complete unfolding and spreading of the protein on the hydrophobic graphite surface. This result is in agreement with the general finding of protein denaturation upon contact with hydrophobic surfaces.